Difference between revisions of "MyMediaWiki:About the articles"
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! {{infobox header}}| '''Name of substrate protein''' | ! {{infobox header}}| '''Name of substrate protein''' | ||
|- | |- | ||
| − | | align="center" colspan="2" bgcolor="#ffffff" | [[Image: | + | | align="center" colspan="2" bgcolor="#ffffff" | [[Image:Substrate protein.png|200px|Substrate protein]] - where it is available |
|- | |- | ||
| Substrate peptide name | | Substrate peptide name | ||
| Line 19: | Line 19: | ||
|- | |- | ||
| Subcellular localization | | Subcellular localization | ||
| − | | | + | | Cellular compartment where the substrate protein can be found |
|- | |- | ||
| Swissprot ID | | Swissprot ID | ||
| − | | Link to the protein's Uniprot | + | | Link to the protein's Uniprot page |
|- | |- | ||
| Reactive glutamines | | Reactive glutamines | ||
| Glutamine residues modified by the enzyme | | Glutamine residues modified by the enzyme | ||
| − | If the crystal structure is available, a link to the picture of modified | + | If the crystal structure is available, a link to the picture of modified residue(s) is included |
|- | |- | ||
| Reactive lysines | | Reactive lysines | ||
| Lysine residues modified by the enzyme | | Lysine residues modified by the enzyme | ||
| − | If the crystal structure is available, a link to the picture of modified | + | If the crystal structure is available, a link to the picture of modified residue(s) is included |
|- | |- | ||
| Substrate sequence | | Substrate sequence | ||
| − | | Sequence containing the residue modified by the enzyme | + | | Sequence portion containing the residue modified by the enzyme |
with the modified residue(s) in ''italic'' | with the modified residue(s) in ''italic'' | ||
|- | |- | ||
| Structure | | Structure | ||
| − | | Link to the crystal structure (if available) deposited in RCSB | + | | Link to the crystal structure (if available) deposited in [http://www.rcsb.org/pdb/home/home.do RCSB PDB] |
|- | |- | ||
| Surface accessibility | | Surface accessibility | ||
| − | | Surface accessibility data obtained with ASAView web server for those substrate proteins | + | | Surface accessibility data obtained with [http://www.netasa.org/asaview/ ASAView] web server for those substrate proteins |
where the modification site is known and the crystal structure contains these residues | where the modification site is known and the crystal structure contains these residues | ||
|- | |- | ||
| Disorder prediction | | Disorder prediction | ||
| − | | Link to [http://iupred.enzim.hu/index.html IUPred]predictor of | + | | Link to [http://iupred.enzim.hu/index.html IUPred]a predictor of intrinsic disorder in proteins |
|- | |- | ||
| Reference | | Reference | ||
| − | | Links to scientific article(s) about determination of transglutaminase substrate proteins through | + | | Links to scientific article(s) about determination of transglutaminase substrate proteins through their PubMed ID:PMID |
|- | |- | ||
| Notes | | Notes | ||
| Relevant informations other than above mentioned about substrate proteins | | Relevant informations other than above mentioned about substrate proteins | ||
| + | |- | ||
| + | | Video | ||
| + | | Video file of the rotating molecule from YouTube, created with [http://www.ks.uiuc.edu/Research/vmd/ VMD] | ||
|- | |- | ||
| {{infobox header}} | | | {{infobox header}} | | ||
|- | |- | ||
|} | |} | ||
Latest revision as of 08:33, 25 December 2007
This is an example how information is organized in our wiki:
| Template:Infobox header| Name of substrate protein | |
|---|---|
| Substrate protein - where it is available | |
| Substrate peptide name | Name of substrate protein |
| Synonyms | Alternative scientific name(s) of substrate protein |
| Determination type | In situ/In vitro |
| Source | Species in which the protein was studied |
| Subcellular localization | Cellular compartment where the substrate protein can be found |
| Swissprot ID | Link to the protein's Uniprot page |
| Reactive glutamines | Glutamine residues modified by the enzyme
If the crystal structure is available, a link to the picture of modified residue(s) is included |
| Reactive lysines | Lysine residues modified by the enzyme
If the crystal structure is available, a link to the picture of modified residue(s) is included |
| Substrate sequence | Sequence portion containing the residue modified by the enzyme
with the modified residue(s) in italic |
| Structure | Link to the crystal structure (if available) deposited in RCSB PDB |
| Surface accessibility | Surface accessibility data obtained with ASAView web server for those substrate proteins
where the modification site is known and the crystal structure contains these residues |
| Disorder prediction | Link to IUPreda predictor of intrinsic disorder in proteins |
| Reference | Links to scientific article(s) about determination of transglutaminase substrate proteins through their PubMed ID:PMID |
| Notes | Relevant informations other than above mentioned about substrate proteins |
| Video | Video file of the rotating molecule from YouTube, created with VMD |
| Template:Infobox header | | |
